J5_9MTR_015

3D structure

PDB id

9MTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site GGS-mutant Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

9MTR|1|2A|G|1758, 9MTR|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTR|1|2A|G|1674
9MTR|1|2A|C|1675
9MTR|1|2A|A|1676
9MTR|1|2A|A|1677
9MTR|1|2A|G|1678
9MTR|1|2A|U|1679
9MTR|1|2A|U|1680
9MTR|1|2A|G|1681
9MTR|1|2A|G|1682
*
9MTR|1|2A|U|1706
9MTR|1|2A|G|1707
*
9MTR|1|2A|C|1751
9MTR|1|2A|C|1752
*
9MTR|1|2A|G|1756
9MTR|1|2A|U|1757
9MTR|1|2A|G|1758
9MTR|1|2A|A|1759
9MTR|1|2A|A|1760
9MTR|1|2A|C|1761
9MTR|1|2A|A|1762
9MTR|1|2A|G|1763
9MTR|1|2A|G|1764
*
9MTR|1|2A|C|1988
9MTR|1|2A|G|1989
9MTR|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA