J5_9MTS_015

3D structure

PDB id

9MTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

9MTS|1|2A|G|1758, 9MTS|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTS|1|2A|G|1674
9MTS|1|2A|C|1675
9MTS|1|2A|A|1676
9MTS|1|2A|A|1677
9MTS|1|2A|G|1678
9MTS|1|2A|U|1679
9MTS|1|2A|U|1680
9MTS|1|2A|G|1681
9MTS|1|2A|G|1682
*
9MTS|1|2A|U|1706
9MTS|1|2A|G|1707
*
9MTS|1|2A|C|1751
9MTS|1|2A|C|1752
*
9MTS|1|2A|G|1756
9MTS|1|2A|U|1757
9MTS|1|2A|G|1758
9MTS|1|2A|A|1759
9MTS|1|2A|A|1760
9MTS|1|2A|C|1761
9MTS|1|2A|A|1762
9MTS|1|2A|G|1763
9MTS|1|2A|G|1764
*
9MTS|1|2A|C|1988
9MTS|1|2A|G|1989
9MTS|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA