Loop J5_9MTS

3D structure

PDB id: 9MTS (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-unmodified Release Factor 1, and P-site fMEAAAKC-peptidyl-tRNAcys at 2.70A resolution
Experimental method: X-RAY DIFFRACTION
Resolution: 2.7 Å

Loop

Sequence: AAAAGACC*GGAUAACA*UCG(2MA)UGUC*GGUUCAG*CGGUCU
Length: 37 nucleotides
Bulged bases: 9MTS|1|2A|A|2448, 9MTS|1|2A|U|2449, 9MTS|1|2A|U|2609
QA status: Modified nucleotides: 2MA

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9MTS|1|2A|A|2057
9MTS|1|2A|A|2058
9MTS|1|2A|A|2059
9MTS|1|2A|A|2060
9MTS|1|2A|G|2061
9MTS|1|2A|A|2062
9MTS|1|2A|C|2063
9MTS|1|2A|C|2064
*
9MTS|1|2A|G|2446
9MTS|1|2A|G|2447
9MTS|1|2A|A|2448
9MTS|1|2A|U|2449
9MTS|1|2A|A|2450
9MTS|1|2A|A|2451
9MTS|1|2A|C|2452
9MTS|1|2A|A|2453
*
9MTS|1|2A|U|2500
9MTS|1|2A|C|2501
9MTS|1|2A|G|2502
9MTS|1|2A|2MA|2503
9MTS|1|2A|U|2504
9MTS|1|2A|G|2505
9MTS|1|2A|U|2506
9MTS|1|2A|C|2507
*
9MTS|1|2A|G|2582
9MTS|1|2A|G|2583
9MTS|1|2A|U|2584
9MTS|1|2A|U|2585
9MTS|1|2A|C|2586
9MTS|1|2A|A|2587
9MTS|1|2A|G|2588
*
9MTS|1|2A|C|2606
9MTS|1|2A|G|2607
9MTS|1|2A|G|2608
9MTS|1|2A|U|2609
9MTS|1|2A|C|2610
9MTS|1|2A|U|2611

Current chains

Chain 2A: 23S Ribosomal RNA

Nearby chains

Chain 25: 50S ribosomal protein L32
Chain 2D: 50S ribosomal protein L2
Chain 2E: 50S ribosomal protein L3
Chain 2F: 50S ribosomal protein L4
Chain 2P: 50S ribosomal protein L15
Chain 2Q: 50S ribosomal protein L16
Chain 2w: Peptide chain release factor 1
Chain 2x: Transfer RNA; tRNA
Chain 2z: P-site Peptidyl-tRNA fMEAAAKC-tRNAcys Peptide-part

J5_9MTS_016