J5_9MTT_018

3D structure

PDB id

9MTT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with mRNA, A-site Q230-N5-methylated Release Factor 1, and P-site deacylated-tRNAcys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9MTT|1|2a|C|36
9MTT|1|2a|U|37
9MTT|1|2a|G|38
9MTT|1|2a|G|39
*
9MTT|1|2a|C|403
9MTT|1|2a|U|404
9MTT|1|2a|U|405
9MTT|1|2a|G|406
*
9MTT|1|2a|C|436
9MTT|1|2a|U|437
9MTT|1|2a|G|438
9MTT|1|2a|A|439
9MTT|1|2a|A|441
9MTT|1|2a|C|442
*
9MTT|1|2a|G|492
9MTT|1|2a|G|493
9MTT|1|2a|U|494
9MTT|1|2a|A|495
9MTT|1|2a|A|496
9MTT|1|2a|U|498
9MTT|1|2a|A|499
9MTT|1|2a|G|500
*
9MTT|1|2a|C|545
9MTT|1|2a|G|546
9MTT|1|2a|A|547
9MTT|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12