J5_9N2B_001
3D structure
- PDB id
- 9N2B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGG*CGUG*CUUUC*GAAG*CAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9N2B_001 not in the Motif Atlas
- Homologous match to J5_5J7L_001
- Geometric discrepancy: 0.0496
- The information below is about J5_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_92941.1
- Basepair signature
- cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
9N2B|1|16|C|36
9N2B|1|16|U|37
9N2B|1|16|G|38
9N2B|1|16|G|39
*
9N2B|1|16|C|403
9N2B|1|16|G|404
9N2B|1|16|U|405
9N2B|1|16|G|406
*
9N2B|1|16|C|436
9N2B|1|16|U|437
9N2B|1|16|U|438
9N2B|1|16|U|439
9N2B|1|16|C|440
*
9N2B|1|16|G|497
9N2B|1|16|A|498
9N2B|1|16|A|499
9N2B|1|16|G|500
*
9N2B|1|16|C|545
9N2B|1|16|A|546
9N2B|1|16|A|547
9N2B|1|16|G|548
Current chains
- Chain 16
- 16S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain SD
- 30S ribosomal protein S4
- Chain SL
- Small ribosomal subunit protein uS12
Coloring options: