J5_9N2B_002

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9N2B_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0502

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9N2B|1|16|C|36
9N2B|1|16|U|37
9N2B|1|16|G|38
9N2B|1|16|G|39
*
9N2B|1|16|C|403
9N2B|1|16|G|404
9N2B|1|16|U|405
9N2B|1|16|G|406
*
9N2B|1|16|C|436
9N2B|1|16|U|437
9N2B|1|16|U|438
9N2B|1|16|U|439
9N2B|1|16|C|440
9N2B|1|16|A|441
9N2B|1|16|G|442
*
9N2B|1|16|C|492
9N2B|1|16|A|493
9N2B|1|16|G|494
9N2B|1|16|A|495
9N2B|1|16|A|496
9N2B|1|16|G|497
9N2B|1|16|A|498
9N2B|1|16|A|499
9N2B|1|16|G|500
*
9N2B|1|16|C|545
9N2B|1|16|A|546
9N2B|1|16|A|547
9N2B|1|16|G|548

Current chains

Chain 16

16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain SD

30S ribosomal protein S4

Chain SL

Small ribosomal subunit protein uS12