3D structure

PDB id
9N2B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CAAG*CGGACGGG*CAC*GAC*GGCAG
Length
23 nucleotides
Bulged bases
9N2B|1|16|A|109, 9N2B|1|16|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9N2B_003 not in the Motif Atlas
Homologous match to J5_5J7L_003
Geometric discrepancy: 0.0911
The information below is about J5_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

9N2B|1|16|C|58
9N2B|1|16|A|59
9N2B|1|16|A|60
9N2B|1|16|G|61
*
9N2B|1|16|C|106
9N2B|1|16|G|107
9N2B|1|16|G|108
9N2B|1|16|A|109
9N2B|1|16|C|110
9N2B|1|16|G|111
9N2B|1|16|G|112
9N2B|1|16|G|113
*
9N2B|1|16|C|314
9N2B|1|16|A|315
9N2B|1|16|C|316
*
9N2B|1|16|G|337
9N2B|1|16|A|338
9N2B|1|16|C|339
*
9N2B|1|16|G|350
9N2B|1|16|G|351
9N2B|1|16|C|352
9N2B|1|16|A|353
9N2B|1|16|G|354

Current chains

Chain 16
16S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain LN
50S ribosomal protein L14
Chain LS
50S ribosomal protein L19
Chain SP
30S ribosomal protein S16
Chain ST
30S ribosomal protein S20

Coloring options:


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