J5_9N2B_004

3D structure

PDB id

9N2B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsB ribosome (BBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9N2B|1|23|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9N2B_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0503

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9N2B|1|23|C|47
9N2B|1|23|G|48
9N2B|1|23|A|49
9N2B|1|23|U|50
9N2B|1|23|G|51
9N2B|1|23|A|52
9N2B|1|23|A|53
9N2B|1|23|G|54
*
9N2B|1|23|C|116
9N2B|1|23|G|117
9N2B|1|23|A|118
9N2B|1|23|A|119
9N2B|1|23|U|120
9N2B|1|23|G|121
*
9N2B|1|23|C|130
9N2B|1|23|A|131
*
9N2B|1|23|U|148
9N2B|1|23|A|149
9N2B|1|23|U|150
*
9N2B|1|23|A|176
9N2B|1|23|G|177
9N2B|1|23|G|178

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain Lh

50S ribosomal protein L34