J5_9N2C_004

3D structure

PDB id

9N2C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9N2C|1|23|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9N2C_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.047

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9N2C|1|23|C|47
9N2C|1|23|G|48
9N2C|1|23|A|49
9N2C|1|23|U|50
9N2C|1|23|G|51
9N2C|1|23|A|52
9N2C|1|23|A|53
9N2C|1|23|G|54
*
9N2C|1|23|C|116
9N2C|1|23|G|117
9N2C|1|23|A|118
9N2C|1|23|A|119
9N2C|1|23|U|120
9N2C|1|23|G|121
*
9N2C|1|23|C|130
9N2C|1|23|A|131
*
9N2C|1|23|U|148
9N2C|1|23|A|149
9N2C|1|23|U|150
*
9N2C|1|23|A|176
9N2C|1|23|G|177
9N2C|1|23|G|178

Current chains

Chain 23

23S ribosomal RNA (rRNA) from the rrnB operon

Nearby chains

Chain Lh

50S ribosomal protein L34