J5_9N2C_008
3D structure
- PDB id
- 9N2C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Impacts of ribosomal RNA sequence variation on gene expression and phenotype: Cryo-EM structure of the rrsH ribosome (HBB-70S)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GAAAGACC*GGA(H2U)AACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9N2C|1|23|A|2062, 9N2C|1|23|A|2448, 9N2C|1|23|H2U|2449, 9N2C|1|23|U|2609
- QA status
- Modified nucleotides: H2U, 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9N2C|1|23|G|2057
9N2C|1|23|A|2058
9N2C|1|23|A|2059
9N2C|1|23|A|2060
9N2C|1|23|G|2061
9N2C|1|23|A|2062
9N2C|1|23|C|2063
9N2C|1|23|C|2064
*
9N2C|1|23|G|2446
9N2C|1|23|G|2447
9N2C|1|23|A|2448
9N2C|1|23|H2U|2449
9N2C|1|23|A|2450
9N2C|1|23|A|2451
9N2C|1|23|C|2452
9N2C|1|23|A|2453
*
9N2C|1|23|U|2500
9N2C|1|23|C|2501
9N2C|1|23|G|2502
9N2C|1|23|2MA|2503
9N2C|1|23|PSU|2504
9N2C|1|23|G|2505
9N2C|1|23|U|2506
9N2C|1|23|C|2507
*
9N2C|1|23|G|2582
9N2C|1|23|G|2583
9N2C|1|23|U|2584
9N2C|1|23|U|2585
9N2C|1|23|U|2586
9N2C|1|23|A|2587
9N2C|1|23|G|2588
*
9N2C|1|23|C|2606
9N2C|1|23|G|2607
9N2C|1|23|G|2608
9N2C|1|23|U|2609
9N2C|1|23|C|2610
9N2C|1|23|C|2611
Current chains
- Chain 23
- 23S ribosomal RNA (rRNA) from the rrnB operon
Nearby chains
- Chain LB
- 50S ribosomal protein L2
- Chain LC
- 50S ribosomal protein L3
- Chain LD
- Large ribosomal subunit protein uL4
- Chain LO
- 50S ribosomal protein L15
- Chain LV
- Large ribosomal subunit protein uL22
- Chain La
- 50S ribosomal protein L27
- Chain Lf
- 50S ribosomal protein L32
- Chain Pt
- Transfer RNA; tRNA
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