J5_9N6X_001
3D structure
- PDB id
- 9N6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SSU processome maturation and disassembly, State B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.71 Å
Loop
- Sequence
- GAUUACUAG*CAAUCUAUUUCAAAGAAUUCAAACUUG*CUCUCAA*UAG*CAAAAGAGC
- Length
- 55 nucleotides
- Bulged bases
- 9N6X|1|L0|U|294, 9N6X|1|L0|A|295, 9N6X|1|L0|C|296, 9N6X|1|L0|U|297, 9N6X|1|L0|A|298, 9N6X|1|L0|A|309, 9N6X|1|L0|A|313, 9N6X|1|L0|A|322, 9N6X|1|L0|A|329, 9N6X|1|L0|C|330, 9N6X|1|L0|U|331, 9N6X|1|L0|U|332, 9N6X|1|L0|A|396, 9N6X|1|L0|A|461, 9N6X|1|L2|A|60, 9N6X|1|L2|G|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9N6X|1|L0|G|291
9N6X|1|L0|A|292
9N6X|1|L0|U|293
9N6X|1|L0|U|294
9N6X|1|L0|A|295
9N6X|1|L0|C|296
9N6X|1|L0|U|297
9N6X|1|L0|A|298
9N6X|1|L0|G|299
*
9N6X|1|L0|C|307
9N6X|1|L0|A|308
9N6X|1|L0|A|309
9N6X|1|L0|U|310
9N6X|1|L0|C|311
9N6X|1|L0|U|312
9N6X|1|L0|A|313
9N6X|1|L0|U|314
9N6X|1|L0|U|315
9N6X|1|L0|U|316
9N6X|1|L0|C|317
9N6X|1|L0|A|318
9N6X|1|L0|A|319
9N6X|1|L0|A|320
9N6X|1|L0|G|321
9N6X|1|L0|A|322
9N6X|1|L0|A|323
9N6X|1|L0|U|324
9N6X|1|L0|U|325
9N6X|1|L0|C|326
9N6X|1|L0|A|327
9N6X|1|L0|A|328
9N6X|1|L0|A|329
9N6X|1|L0|C|330
9N6X|1|L0|U|331
9N6X|1|L0|U|332
9N6X|1|L0|G|333
*
9N6X|1|L0|C|391
9N6X|1|L0|U|392
9N6X|1|L0|C|393
9N6X|1|L0|U|394
9N6X|1|L0|C|395
9N6X|1|L0|A|396
9N6X|1|L0|A|397
*
9N6X|1|L0|U|460
9N6X|1|L0|A|461
9N6X|1|L0|G|462
*
9N6X|1|L2|C|54
9N6X|1|L2|A|55
9N6X|1|L2|A|56
9N6X|1|L2|A|57
9N6X|1|L2|A|58
9N6X|1|L2|G|59
9N6X|1|L2|A|60
9N6X|1|L2|G|61
9N6X|1|L2|C|62
Current chains
- Chain L0
- 5'ETS rRNA
- Chain L2
- TPA: Saccharomyces cerevisiae U3a gene for small nucleolar RNA U3a
Nearby chains
- Chain LO
- Periodic tryptophan protein 2
- Chain LS
- U3 small nucleolar RNA-associated protein 18
- Chain LT
- U3 small nucleolar RNA-associated protein 21
- Chain LW
- U3 small nucleolar RNA-associated protein 7
- Chain LZ
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain SB
- Nucleolar protein 58
- Chain SI
- Ribosome biogenesis protein BMS1
- Chain SL
- rRNA-processing protein FCF1
- Chain SM
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain SS
- U3 small nucleolar RNA-associated protein 14
- Chain SY
- U3 small nucleolar RNA-associated protein 11
Coloring options: