J5_9NJF_001

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9NJF|1|R1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NJF_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.08

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9NJF|1|R1|C|47
9NJF|1|R1|G|48
9NJF|1|R1|A|49
9NJF|1|R1|U|50
9NJF|1|R1|G|51
9NJF|1|R1|A|52
9NJF|1|R1|A|53
9NJF|1|R1|G|54
*
9NJF|1|R1|C|116
9NJF|1|R1|G|117
9NJF|1|R1|A|118
9NJF|1|R1|A|119
9NJF|1|R1|U|120
9NJF|1|R1|G|121
*
9NJF|1|R1|C|130
9NJF|1|R1|A|131
*
9NJF|1|R1|U|148
9NJF|1|R1|A|149
9NJF|1|R1|U|150
*
9NJF|1|R1|A|176
9NJF|1|R1|G|177
9NJF|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34