J5_9NJF_005
3D structure
- PDB id
- 9NJF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 9NJF|1|R1|A|2062, 9NJF|1|R1|A|2448, 9NJF|1|R1|U|2449, 9NJF|1|R1|U|2585, 9NJF|1|R1|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NJF|1|R1|G|2057
9NJF|1|R1|A|2058
9NJF|1|R1|A|2059
9NJF|1|R1|A|2060
9NJF|1|R1|G|2061
9NJF|1|R1|A|2062
9NJF|1|R1|C|2063
9NJF|1|R1|C|2064
*
9NJF|1|R1|G|2446
9NJF|1|R1|G|2447
9NJF|1|R1|A|2448
9NJF|1|R1|U|2449
9NJF|1|R1|A|2450
9NJF|1|R1|A|2451
9NJF|1|R1|C|2452
9NJF|1|R1|A|2453
*
9NJF|1|R1|U|2500
9NJF|1|R1|C|2501
9NJF|1|R1|G|2502
9NJF|1|R1|A|2503
9NJF|1|R1|U|2504
9NJF|1|R1|G|2505
9NJF|1|R1|U|2506
*
9NJF|1|R1|G|2583
9NJF|1|R1|U|2584
9NJF|1|R1|U|2585
9NJF|1|R1|U|2586
9NJF|1|R1|A|2587
9NJF|1|R1|G|2588
*
9NJF|1|R1|C|2606
9NJF|1|R1|G|2607
9NJF|1|R1|G|2608
9NJF|1|R1|U|2609
9NJF|1|R1|C|2610
9NJF|1|R1|C|2611
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L15
- Chain 16
- 50S ribosomal protein L16
- Chain 2
- 50S ribosomal protein L2
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 3
- 50S ribosomal protein L3
- Chain 32
- 50S ribosomal protein L32
- Chain 4
- Large ribosomal subunit protein uL4
- Chain T
- Transfer RNA; tRNA
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