J5_9NJF_007

3D structure

PDB id

9NJF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NJF_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.1084

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9NJF|1|R3|C|36
9NJF|1|R3|U|37
9NJF|1|R3|G|38
9NJF|1|R3|G|39
*
9NJF|1|R3|C|403
9NJF|1|R3|G|404
9NJF|1|R3|U|405
9NJF|1|R3|G|406
*
9NJF|1|R3|C|436
9NJF|1|R3|U|437
9NJF|1|R3|U|438
9NJF|1|R3|U|439
9NJF|1|R3|C|440
*
9NJF|1|R3|G|497
9NJF|1|R3|A|498
9NJF|1|R3|A|499
9NJF|1|R3|G|500
*
9NJF|1|R3|C|545
9NJF|1|R3|A|546
9NJF|1|R3|A|547
9NJF|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12