J5_9NKL_006

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGG*CGUGUA*UACUUUC*GAAG*CAAG

Length

25 nucleotides

Bulged bases

9NKL|1|R3|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R3|C|36
9NKL|1|R3|U|37
9NKL|1|R3|G|38
9NKL|1|R3|G|39
*
9NKL|1|R3|C|403
9NKL|1|R3|G|404
9NKL|1|R3|U|405
9NKL|1|R3|G|406
9NKL|1|R3|U|407
9NKL|1|R3|A|408
*
9NKL|1|R3|U|434
9NKL|1|R3|A|435
9NKL|1|R3|C|436
9NKL|1|R3|U|437
9NKL|1|R3|U|438
9NKL|1|R3|U|439
9NKL|1|R3|C|440
*
9NKL|1|R3|G|497
9NKL|1|R3|A|498
9NKL|1|R3|A|499
9NKL|1|R3|G|500
*
9NKL|1|R3|C|545
9NKL|1|R3|A|546
9NKL|1|R3|A|547
9NKL|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12