3D structure

PDB id
9NKL (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S initiation complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGCAAG*CGGACGGG*CAC*GAC*GGCAGCA
Length
27 nucleotides
Bulged bases
9NKL|1|R3|A|109, 9NKL|1|R3|C|352, 9NKL|1|R3|A|353
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9NKL|1|R3|U|56
9NKL|1|R3|G|57
9NKL|1|R3|C|58
9NKL|1|R3|A|59
9NKL|1|R3|A|60
9NKL|1|R3|G|61
*
9NKL|1|R3|C|106
9NKL|1|R3|G|107
9NKL|1|R3|G|108
9NKL|1|R3|A|109
9NKL|1|R3|C|110
9NKL|1|R3|G|111
9NKL|1|R3|G|112
9NKL|1|R3|G|113
*
9NKL|1|R3|C|314
9NKL|1|R3|A|315
9NKL|1|R3|C|316
*
9NKL|1|R3|G|337
9NKL|1|R3|A|338
9NKL|1|R3|C|339
*
9NKL|1|R3|G|350
9NKL|1|R3|G|351
9NKL|1|R3|C|352
9NKL|1|R3|A|353
9NKL|1|R3|G|354
9NKL|1|R3|C|355
9NKL|1|R3|A|356

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain 14
50S ribosomal protein L14
Chain 19
50S ribosomal protein L19
Chain sp
Small ribosomal subunit protein bS16
Chain st
30S ribosomal protein S20

Coloring options:

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