J5_9NKL_008

3D structure

PDB id

9NKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAAG*CGGACGGG*CAC*GAC*GGCAGCA

Length

27 nucleotides

Bulged bases

9NKL|1|R3|A|109, 9NKL|1|R3|C|352, 9NKL|1|R3|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NKL|1|R3|U|56
9NKL|1|R3|G|57
9NKL|1|R3|C|58
9NKL|1|R3|A|59
9NKL|1|R3|A|60
9NKL|1|R3|G|61
*
9NKL|1|R3|C|106
9NKL|1|R3|G|107
9NKL|1|R3|G|108
9NKL|1|R3|A|109
9NKL|1|R3|C|110
9NKL|1|R3|G|111
9NKL|1|R3|G|112
9NKL|1|R3|G|113
*
9NKL|1|R3|C|314
9NKL|1|R3|A|315
9NKL|1|R3|C|316
*
9NKL|1|R3|G|337
9NKL|1|R3|A|338
9NKL|1|R3|C|339
*
9NKL|1|R3|G|350
9NKL|1|R3|G|351
9NKL|1|R3|C|352
9NKL|1|R3|A|353
9NKL|1|R3|G|354
9NKL|1|R3|C|355
9NKL|1|R3|A|356

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20