J5_9NL5_007

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUGUA*UACUUUCAG*CAGAAGAAG*CAAG

Length

32 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R3|C|36
9NL5|1|R3|U|37
9NL5|1|R3|G|38
9NL5|1|R3|G|39
*
9NL5|1|R3|C|403
9NL5|1|R3|G|404
9NL5|1|R3|U|405
9NL5|1|R3|G|406
9NL5|1|R3|U|407
9NL5|1|R3|A|408
*
9NL5|1|R3|U|434
9NL5|1|R3|A|435
9NL5|1|R3|C|436
9NL5|1|R3|U|437
9NL5|1|R3|U|438
9NL5|1|R3|U|439
9NL5|1|R3|C|440
9NL5|1|R3|A|441
9NL5|1|R3|G|442
*
9NL5|1|R3|C|492
9NL5|1|R3|A|493
9NL5|1|R3|G|494
9NL5|1|R3|A|495
9NL5|1|R3|A|496
9NL5|1|R3|G|497
9NL5|1|R3|A|498
9NL5|1|R3|A|499
9NL5|1|R3|G|500
*
9NL5|1|R3|C|545
9NL5|1|R3|A|546
9NL5|1|R3|A|547
9NL5|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12