J5_9NL5_008

3D structure

PDB id

9NL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pre-elongation complex without an A-site tRNA with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAG*CGGACGGG*CAC*GAC*GGCAGCA

Length

27 nucleotides

Bulged bases

9NL5|1|R3|A|60, 9NL5|1|R3|A|109, 9NL5|1|R3|C|352, 9NL5|1|R3|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL5|1|R3|U|56
9NL5|1|R3|G|57
9NL5|1|R3|C|58
9NL5|1|R3|A|59
9NL5|1|R3|A|60
9NL5|1|R3|G|61
*
9NL5|1|R3|C|106
9NL5|1|R3|G|107
9NL5|1|R3|G|108
9NL5|1|R3|A|109
9NL5|1|R3|C|110
9NL5|1|R3|G|111
9NL5|1|R3|G|112
9NL5|1|R3|G|113
*
9NL5|1|R3|C|314
9NL5|1|R3|A|315
9NL5|1|R3|C|316
*
9NL5|1|R3|G|337
9NL5|1|R3|A|338
9NL5|1|R3|C|339
*
9NL5|1|R3|G|350
9NL5|1|R3|G|351
9NL5|1|R3|C|352
9NL5|1|R3|A|353
9NL5|1|R3|G|354
9NL5|1|R3|C|355
9NL5|1|R3|A|356

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20