J5_9NL6_001

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9NL6|1|R1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NL6_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0779

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9NL6|1|R1|C|47
9NL6|1|R1|G|48
9NL6|1|R1|A|49
9NL6|1|R1|U|50
9NL6|1|R1|G|51
9NL6|1|R1|A|52
9NL6|1|R1|A|53
9NL6|1|R1|G|54
*
9NL6|1|R1|C|116
9NL6|1|R1|G|117
9NL6|1|R1|A|118
9NL6|1|R1|A|119
9NL6|1|R1|U|120
9NL6|1|R1|G|121
*
9NL6|1|R1|C|130
9NL6|1|R1|A|131
*
9NL6|1|R1|U|148
9NL6|1|R1|A|149
9NL6|1|R1|U|150
*
9NL6|1|R1|A|176
9NL6|1|R1|G|177
9NL6|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34