J5_9NL6_007

3D structure

PDB id

9NL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 1/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAGC*GCAGAAGAAG*CAAG

Length

30 nucleotides

Bulged bases

9NL6|1|R3|A|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NL6|1|R3|C|36
9NL6|1|R3|U|37
9NL6|1|R3|G|38
9NL6|1|R3|G|39
*
9NL6|1|R3|C|403
9NL6|1|R3|G|404
9NL6|1|R3|U|405
9NL6|1|R3|G|406
*
9NL6|1|R3|C|436
9NL6|1|R3|U|437
9NL6|1|R3|U|438
9NL6|1|R3|U|439
9NL6|1|R3|C|440
9NL6|1|R3|A|441
9NL6|1|R3|G|442
9NL6|1|R3|C|443
*
9NL6|1|R3|G|491
9NL6|1|R3|C|492
9NL6|1|R3|A|493
9NL6|1|R3|G|494
9NL6|1|R3|A|495
9NL6|1|R3|A|496
9NL6|1|R3|G|497
9NL6|1|R3|A|498
9NL6|1|R3|A|499
9NL6|1|R3|G|500
*
9NL6|1|R3|C|545
9NL6|1|R3|A|546
9NL6|1|R3|A|547
9NL6|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12