J5_9NL7_007

3D structure

PDB id

9NL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Non-hydrolytic 2/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NL7_007 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0845

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9NL7|1|R3|C|36
9NL7|1|R3|U|37
9NL7|1|R3|G|38
9NL7|1|R3|G|39
*
9NL7|1|R3|C|403
9NL7|1|R3|G|404
9NL7|1|R3|U|405
9NL7|1|R3|G|406
*
9NL7|1|R3|C|436
9NL7|1|R3|U|437
9NL7|1|R3|U|438
9NL7|1|R3|U|439
9NL7|1|R3|C|440
*
9NL7|1|R3|G|497
9NL7|1|R3|A|498
9NL7|1|R3|A|499
9NL7|1|R3|G|500
*
9NL7|1|R3|C|545
9NL7|1|R3|A|546
9NL7|1|R3|A|547
9NL7|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12