J5_9NLB_007

3D structure

PDB id

9NLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 2 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAG*CGGACGGG*CAC*GAC*GGCAGCA

Length

27 nucleotides

Bulged bases

9NLB|1|R3|A|109, 9NLB|1|R3|C|352, 9NLB|1|R3|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLB|1|R3|U|56
9NLB|1|R3|G|57
9NLB|1|R3|C|58
9NLB|1|R3|A|59
9NLB|1|R3|A|60
9NLB|1|R3|G|61
*
9NLB|1|R3|C|106
9NLB|1|R3|G|107
9NLB|1|R3|G|108
9NLB|1|R3|A|109
9NLB|1|R3|C|110
9NLB|1|R3|G|111
9NLB|1|R3|G|112
9NLB|1|R3|G|113
*
9NLB|1|R3|C|314
9NLB|1|R3|A|315
9NLB|1|R3|C|316
*
9NLB|1|R3|G|337
9NLB|1|R3|A|338
9NLB|1|R3|C|339
*
9NLB|1|R3|G|350
9NLB|1|R3|G|351
9NLB|1|R3|C|352
9NLB|1|R3|A|353
9NLB|1|R3|G|354
9NLB|1|R3|C|355
9NLB|1|R3|A|356

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20