J5_9NLE_006

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUGUA*UACUUUCAG*CAGAAGAAG*CAAG

Length

32 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLE|1|R3|C|36
9NLE|1|R3|U|37
9NLE|1|R3|G|38
9NLE|1|R3|G|39
*
9NLE|1|R3|C|403
9NLE|1|R3|G|404
9NLE|1|R3|U|405
9NLE|1|R3|G|406
9NLE|1|R3|U|407
9NLE|1|R3|A|408
*
9NLE|1|R3|U|434
9NLE|1|R3|A|435
9NLE|1|R3|C|436
9NLE|1|R3|U|437
9NLE|1|R3|U|438
9NLE|1|R3|U|439
9NLE|1|R3|C|440
9NLE|1|R3|A|441
9NLE|1|R3|G|442
*
9NLE|1|R3|C|492
9NLE|1|R3|A|493
9NLE|1|R3|G|494
9NLE|1|R3|A|495
9NLE|1|R3|A|496
9NLE|1|R3|G|497
9NLE|1|R3|A|498
9NLE|1|R3|A|499
9NLE|1|R3|G|500
*
9NLE|1|R3|C|545
9NLE|1|R3|A|546
9NLE|1|R3|A|547
9NLE|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12