J5_9NLE_007

3D structure

PDB id

9NLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-EttA in Hydrolytic 1 conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAGUC*GGCGGACGGG*CAC*GAC*GGCAGCA

Length

31 nucleotides

Bulged bases

9NLE|1|R3|A|109, 9NLE|1|R3|C|352, 9NLE|1|R3|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLE|1|R3|U|56
9NLE|1|R3|G|57
9NLE|1|R3|C|58
9NLE|1|R3|A|59
9NLE|1|R3|A|60
9NLE|1|R3|G|61
9NLE|1|R3|U|62
9NLE|1|R3|C|63
*
9NLE|1|R3|G|104
9NLE|1|R3|G|105
9NLE|1|R3|C|106
9NLE|1|R3|G|107
9NLE|1|R3|G|108
9NLE|1|R3|A|109
9NLE|1|R3|C|110
9NLE|1|R3|G|111
9NLE|1|R3|G|112
9NLE|1|R3|G|113
*
9NLE|1|R3|C|314
9NLE|1|R3|A|315
9NLE|1|R3|C|316
*
9NLE|1|R3|G|337
9NLE|1|R3|A|338
9NLE|1|R3|C|339
*
9NLE|1|R3|G|350
9NLE|1|R3|G|351
9NLE|1|R3|C|352
9NLE|1|R3|A|353
9NLE|1|R3|G|354
9NLE|1|R3|C|355
9NLE|1|R3|A|356

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20