J5_9NLF_006

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NLF_006 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0874

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

9NLF|1|R3|C|36
9NLF|1|R3|U|37
9NLF|1|R3|G|38
9NLF|1|R3|G|39
*
9NLF|1|R3|C|403
9NLF|1|R3|G|404
9NLF|1|R3|U|405
9NLF|1|R3|G|406
*
9NLF|1|R3|C|436
9NLF|1|R3|U|437
9NLF|1|R3|U|438
9NLF|1|R3|U|439
9NLF|1|R3|C|440
*
9NLF|1|R3|G|497
9NLF|1|R3|A|498
9NLF|1|R3|A|499
9NLF|1|R3|G|500
*
9NLF|1|R3|C|545
9NLF|1|R3|A|546
9NLF|1|R3|A|547
9NLF|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12