J5_9NLF_007

3D structure

PDB id

9NLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Hydrolytic 2/PtIM(a) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAGC*GCAGAAGAAG*CAAG

Length

30 nucleotides

Bulged bases

9NLF|1|R3|A|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLF|1|R3|C|36
9NLF|1|R3|U|37
9NLF|1|R3|G|38
9NLF|1|R3|G|39
*
9NLF|1|R3|C|403
9NLF|1|R3|G|404
9NLF|1|R3|U|405
9NLF|1|R3|G|406
*
9NLF|1|R3|C|436
9NLF|1|R3|U|437
9NLF|1|R3|U|438
9NLF|1|R3|U|439
9NLF|1|R3|C|440
9NLF|1|R3|A|441
9NLF|1|R3|G|442
9NLF|1|R3|C|443
*
9NLF|1|R3|G|491
9NLF|1|R3|C|492
9NLF|1|R3|A|493
9NLF|1|R3|G|494
9NLF|1|R3|A|495
9NLF|1|R3|A|496
9NLF|1|R3|G|497
9NLF|1|R3|A|498
9NLF|1|R3|A|499
9NLF|1|R3|G|500
*
9NLF|1|R3|C|545
9NLF|1|R3|A|546
9NLF|1|R3|A|547
9NLF|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12