J5_9NLH_001

3D structure

PDB id

9NLH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with YheS-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9NLH|1|R1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NLH_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.081

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9NLH|1|R1|C|47
9NLH|1|R1|G|48
9NLH|1|R1|A|49
9NLH|1|R1|U|50
9NLH|1|R1|G|51
9NLH|1|R1|A|52
9NLH|1|R1|A|53
9NLH|1|R1|G|54
*
9NLH|1|R1|C|116
9NLH|1|R1|G|117
9NLH|1|R1|A|118
9NLH|1|R1|A|119
9NLH|1|R1|U|120
9NLH|1|R1|G|121
*
9NLH|1|R1|C|130
9NLH|1|R1|A|131
*
9NLH|1|R1|U|148
9NLH|1|R1|A|149
9NLH|1|R1|U|150
*
9NLH|1|R1|A|176
9NLH|1|R1|G|177
9NLH|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34