J5_9NLH_005
3D structure
- PDB id
- 9NLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli Initiation complex with YheS-EQ2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAGACC*GGAUAACAG*CCUCGAUGU*GUUUAG*CGGUCC
- Length
- 38 nucleotides
- Bulged bases
- 9NLH|1|R1|A|2448, 9NLH|1|R1|U|2449, 9NLH|1|R1|U|2504, 9NLH|1|R1|U|2585, 9NLH|1|R1|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9NLH|1|R1|G|2057
9NLH|1|R1|A|2058
9NLH|1|R1|A|2059
9NLH|1|R1|A|2060
9NLH|1|R1|G|2061
9NLH|1|R1|A|2062
9NLH|1|R1|C|2063
9NLH|1|R1|C|2064
*
9NLH|1|R1|G|2446
9NLH|1|R1|G|2447
9NLH|1|R1|A|2448
9NLH|1|R1|U|2449
9NLH|1|R1|A|2450
9NLH|1|R1|A|2451
9NLH|1|R1|C|2452
9NLH|1|R1|A|2453
9NLH|1|R1|G|2454
*
9NLH|1|R1|C|2498
9NLH|1|R1|C|2499
9NLH|1|R1|U|2500
9NLH|1|R1|C|2501
9NLH|1|R1|G|2502
9NLH|1|R1|A|2503
9NLH|1|R1|U|2504
9NLH|1|R1|G|2505
9NLH|1|R1|U|2506
*
9NLH|1|R1|G|2583
9NLH|1|R1|U|2584
9NLH|1|R1|U|2585
9NLH|1|R1|U|2586
9NLH|1|R1|A|2587
9NLH|1|R1|G|2588
*
9NLH|1|R1|C|2606
9NLH|1|R1|G|2607
9NLH|1|R1|G|2608
9NLH|1|R1|U|2609
9NLH|1|R1|C|2610
9NLH|1|R1|C|2611
Current chains
- Chain R1
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L15
- Chain 16
- 50S ribosomal protein L16
- Chain 2
- 50S ribosomal protein L2
- Chain 22
- Large ribosomal subunit protein uL22
- Chain 3
- 50S ribosomal protein L3
- Chain 32
- 50S ribosomal protein L32
- Chain 4
- Large ribosomal subunit protein uL4
- Chain T
- Transfer RNA; tRNA
Coloring options: