3D structure

PDB id
9NLH (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli Initiation complex with YheS-EQ2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGG*CGUG*CUUUCAGC*GCAGAAGAAG*CAAG
Length
30 nucleotides
Bulged bases
9NLH|1|R3|A|493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9NLH|1|R3|C|36
9NLH|1|R3|U|37
9NLH|1|R3|G|38
9NLH|1|R3|G|39
*
9NLH|1|R3|C|403
9NLH|1|R3|G|404
9NLH|1|R3|U|405
9NLH|1|R3|G|406
*
9NLH|1|R3|C|436
9NLH|1|R3|U|437
9NLH|1|R3|U|438
9NLH|1|R3|U|439
9NLH|1|R3|C|440
9NLH|1|R3|A|441
9NLH|1|R3|G|442
9NLH|1|R3|C|443
*
9NLH|1|R3|G|491
9NLH|1|R3|C|492
9NLH|1|R3|A|493
9NLH|1|R3|G|494
9NLH|1|R3|A|495
9NLH|1|R3|A|496
9NLH|1|R3|G|497
9NLH|1|R3|A|498
9NLH|1|R3|A|499
9NLH|1|R3|G|500
*
9NLH|1|R3|C|545
9NLH|1|R3|A|546
9NLH|1|R3|A|547
9NLH|1|R3|G|548

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sd
30S ribosomal protein S4
Chain sl
Small ribosomal subunit protein uS12

Coloring options:

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