J5_9NLJ_007

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGG*CGUGUAU*GUACUUUCAG*CAGAAGAAG*CAAG

Length

34 nucleotides

Bulged bases

9NLJ|1|R3|U|438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|C|36
9NLJ|1|R3|U|37
9NLJ|1|R3|G|38
9NLJ|1|R3|G|39
*
9NLJ|1|R3|C|403
9NLJ|1|R3|G|404
9NLJ|1|R3|U|405
9NLJ|1|R3|G|406
9NLJ|1|R3|U|407
9NLJ|1|R3|A|408
9NLJ|1|R3|U|409
*
9NLJ|1|R3|G|433
9NLJ|1|R3|U|434
9NLJ|1|R3|A|435
9NLJ|1|R3|C|436
9NLJ|1|R3|U|437
9NLJ|1|R3|U|438
9NLJ|1|R3|U|439
9NLJ|1|R3|C|440
9NLJ|1|R3|A|441
9NLJ|1|R3|G|442
*
9NLJ|1|R3|C|492
9NLJ|1|R3|A|493
9NLJ|1|R3|G|494
9NLJ|1|R3|A|495
9NLJ|1|R3|A|496
9NLJ|1|R3|G|497
9NLJ|1|R3|A|498
9NLJ|1|R3|A|499
9NLJ|1|R3|G|500
*
9NLJ|1|R3|C|545
9NLJ|1|R3|A|546
9NLJ|1|R3|A|547
9NLJ|1|R3|G|548

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain sd

30S ribosomal protein S4

Chain sl

Small ribosomal subunit protein uS12