J5_9NLJ_008

3D structure

PDB id

9NLJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli Initiation complex with Uup-EQ2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAG*CGGACGGG*CAC*GAC*GGCAGCA

Length

27 nucleotides

Bulged bases

9NLJ|1|R3|A|60, 9NLJ|1|R3|A|109, 9NLJ|1|R3|C|352, 9NLJ|1|R3|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9NLJ|1|R3|U|56
9NLJ|1|R3|G|57
9NLJ|1|R3|C|58
9NLJ|1|R3|A|59
9NLJ|1|R3|A|60
9NLJ|1|R3|G|61
*
9NLJ|1|R3|C|106
9NLJ|1|R3|G|107
9NLJ|1|R3|G|108
9NLJ|1|R3|A|109
9NLJ|1|R3|C|110
9NLJ|1|R3|G|111
9NLJ|1|R3|G|112
9NLJ|1|R3|G|113
*
9NLJ|1|R3|C|314
9NLJ|1|R3|A|315
9NLJ|1|R3|C|316
*
9NLJ|1|R3|G|337
9NLJ|1|R3|A|338
9NLJ|1|R3|C|339
*
9NLJ|1|R3|G|350
9NLJ|1|R3|G|351
9NLJ|1|R3|C|352
9NLJ|1|R3|A|353
9NLJ|1|R3|G|354
9NLJ|1|R3|C|355
9NLJ|1|R3|A|356

Current chains

Chain R3

16S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L14

Chain 19

50S ribosomal protein L19

Chain sp

Small ribosomal subunit protein bS16

Chain st

30S ribosomal protein S20