J5_9NLS_001

3D structure

PDB id

9NLS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9NLS|1|R1|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9NLS_001 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0855

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9NLS|1|R1|C|47
9NLS|1|R1|G|48
9NLS|1|R1|A|49
9NLS|1|R1|U|50
9NLS|1|R1|G|51
9NLS|1|R1|A|52
9NLS|1|R1|A|53
9NLS|1|R1|G|54
*
9NLS|1|R1|C|116
9NLS|1|R1|G|117
9NLS|1|R1|A|118
9NLS|1|R1|A|119
9NLS|1|R1|U|120
9NLS|1|R1|G|121
*
9NLS|1|R1|C|130
9NLS|1|R1|A|131
*
9NLS|1|R1|U|148
9NLS|1|R1|A|149
9NLS|1|R1|U|150
*
9NLS|1|R1|A|176
9NLS|1|R1|G|177
9NLS|1|R1|G|178

Current chains

Chain R1

23S ribosomal RNA

Nearby chains

Chain 34

50S ribosomal protein L34