3D structure

PDB id
9NLS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli initiation complex with EQ2-YbiT in Intermediate/PtIM(b) conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
CUGG*CGUG*CUUUC*GAAG*CAAG
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_9NLS_006 not in the Motif Atlas
Homologous match to J5_5J7L_001
Geometric discrepancy: 0.0866
The information below is about J5_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_92941.1
Basepair signature
cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

9NLS|1|R3|C|36
9NLS|1|R3|U|37
9NLS|1|R3|G|38
9NLS|1|R3|G|39
*
9NLS|1|R3|C|403
9NLS|1|R3|G|404
9NLS|1|R3|U|405
9NLS|1|R3|G|406
*
9NLS|1|R3|C|436
9NLS|1|R3|U|437
9NLS|1|R3|U|438
9NLS|1|R3|U|439
9NLS|1|R3|C|440
*
9NLS|1|R3|G|497
9NLS|1|R3|A|498
9NLS|1|R3|A|499
9NLS|1|R3|G|500
*
9NLS|1|R3|C|545
9NLS|1|R3|A|546
9NLS|1|R3|A|547
9NLS|1|R3|G|548

Current chains

Chain R3
16S ribosomal RNA

Nearby chains

Chain sd
30S ribosomal protein S4
Chain sl
Small ribosomal subunit protein uS12

Coloring options:


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