J5_9O3I_011

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

9O3I|1|2A|U|272|||A, 9O3I|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3I|1|2A|C|268
9O3I|1|2A|U|269
9O3I|1|2A|A|270
9O3I|1|2A|A|271
9O3I|1|2A|A|271|||A
9O3I|1|2A|C|271|||B
*
9O3I|1|2A|G|271|||V
9O3I|1|2A|G|271|||W
9O3I|1|2A|G|271|||X
9O3I|1|2A|U|271|||Y
9O3I|1|2A|C|271|||Z
9O3I|1|2A|G|272
9O3I|1|2A|U|272|||A
9O3I|1|2A|G|272|||B
*
9O3I|1|2A|C|366
9O3I|1|2A|G|370
9O3I|1|2A|A|371
9O3I|1|2A|G|372
9O3I|1|2A|U|373
9O3I|1|2A|A|374
9O3I|1|2A|C|375
*
9O3I|1|2A|G|399
9O3I|1|2A|G|400
9O3I|1|2A|A|401
9O3I|1|2A|A|402
9O3I|1|2A|U|403
9O3I|1|2A|C|404
9O3I|1|2A|U|405
9O3I|1|2A|G|406
*
9O3I|1|2A|U|421
9O3I|1|2A|A|422
9O3I|1|2A|A|423
9O3I|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9