J5_9O3I_014

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAG*CAAAG

Length

24 nucleotides

Bulged bases

9O3I|1|2A|A|652|||B

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3I|1|2A|C|601
9O3I|1|2A|G|602
9O3I|1|2A|A|603
9O3I|1|2A|G|604
*
9O3I|1|2A|C|624
9O3I|1|2A|G|625
9O3I|1|2A|U|626
9O3I|1|2A|A|627
9O3I|1|2A|G|628
*
9O3I|1|2A|C|635
9O3I|1|2A|G|636
9O3I|1|2A|A|637
9O3I|1|2A|G|638
*
9O3I|1|2A|C|650
9O3I|1|2A|G|651
9O3I|1|2A|C|652
9O3I|1|2A|A|652|||A
9O3I|1|2A|A|652|||B
9O3I|1|2A|G|652|||C
*
9O3I|1|2A|C|652|||V
9O3I|1|2A|A|653
9O3I|1|2A|A|654
9O3I|1|2A|A|655
9O3I|1|2A|G|656

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 28

50S ribosomal protein L35

Chain 2F

50S ribosomal protein L4

Chain 2P

50S ribosomal protein L15