J5_9O3I_018

3D structure

PDB id

9O3I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ketolide telithromycin, mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3I|1|2a|C|36
9O3I|1|2a|U|37
9O3I|1|2a|G|38
9O3I|1|2a|G|39
*
9O3I|1|2a|C|403
9O3I|1|2a|U|404
9O3I|1|2a|U|405
9O3I|1|2a|G|406
*
9O3I|1|2a|C|436
9O3I|1|2a|U|437
9O3I|1|2a|G|438
9O3I|1|2a|A|439
9O3I|1|2a|A|441
9O3I|1|2a|C|442
*
9O3I|1|2a|G|492
9O3I|1|2a|G|493
9O3I|1|2a|U|494
9O3I|1|2a|A|495
9O3I|1|2a|A|496
9O3I|1|2a|U|498
9O3I|1|2a|A|499
9O3I|1|2a|G|500
*
9O3I|1|2a|C|545
9O3I|1|2a|G|546
9O3I|1|2a|A|547
9O3I|1|2a|G|548

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12