J5_9O3J_015

3D structure

PDB id

9O3J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type drug-free Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Lys-tRNAlys, P-site fMRC-peptidyl-tRNAmet, and deacylated E-site tRNAlys at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCAAGUUGG*UG*CC*GUGAACAGG*CGC

Length

25 nucleotides

Bulged bases

9O3J|1|2A|G|1758, 9O3J|1|2A|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3J|1|2A|G|1674
9O3J|1|2A|C|1675
9O3J|1|2A|A|1676
9O3J|1|2A|A|1677
9O3J|1|2A|G|1678
9O3J|1|2A|U|1679
9O3J|1|2A|U|1680
9O3J|1|2A|G|1681
9O3J|1|2A|G|1682
*
9O3J|1|2A|U|1706
9O3J|1|2A|G|1707
*
9O3J|1|2A|C|1751
9O3J|1|2A|C|1752
*
9O3J|1|2A|G|1756
9O3J|1|2A|U|1757
9O3J|1|2A|G|1758
9O3J|1|2A|A|1759
9O3J|1|2A|A|1760
9O3J|1|2A|C|1761
9O3J|1|2A|A|1762
9O3J|1|2A|G|1763
9O3J|1|2A|G|1764
*
9O3J|1|2A|C|1988
9O3J|1|2A|G|1989
9O3J|1|2A|C|1990

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2O

50S ribosomal protein L14

Chain 2T

50S ribosomal protein L19

Chain 2a

Small subunit ribosomal RNA; SSU rRNA