J5_9O3W_003

3D structure

PDB id

9O3W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome bound to IDB-001 stalled on MYC nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9O3W|1|L5|G|3620, 9O3W|1|L5|G|3625

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9O3W|1|L5|G|2855
9O3W|1|L5|C|2856
9O3W|1|L5|A|2857
9O3W|1|L5|A|2858
9O3W|1|L5|G|2859
9O3W|1|L5|C|2860
9O3W|1|L5|OMC|2861
9O3W|1|L5|G|2862
9O3W|1|L5|G|2863
*
9O3W|1|L5|U|2887
9O3W|1|L5|G|2888
*
9O3W|1|L5|U|3613
9O3W|1|L5|G|3614
*
9O3W|1|L5|C|3618
9O3W|1|L5|G|3619
9O3W|1|L5|G|3620
9O3W|1|L5|A|3621
9O3W|1|L5|C|3622
9O3W|1|L5|C|3623
9O3W|1|L5|A|3624
9O3W|1|L5|G|3625
9O3W|1|L5|G|3626
*
9O3W|1|L5|C|3835
9O3W|1|L5|A|3836
9O3W|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LR

Large ribosomal subunit protein eL19

Chain LV

Large ribosomal subunit protein uL14

Chain LW

Large ribosomal subunit protein eL24

Chain S2

Small subunit ribosomal RNA; SSU rRNA