J5_9O3Y_004
3D structure
- PDB id
- 9O3Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human 80S ribosome bound to IDB-002 stalled on FPAK-containing nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)(PSU)(PSU)AG*(PSU)AGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9O3Y|1|L5|A|3908, 9O3Y|1|L5|A|4394, 9O3Y|1|L5|U|4450, 9O3Y|1|L5|G|4451, 9O3Y|1|L5|U|4555, 9O3Y|1|L5|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9O3Y|1|L5|A|3903
9O3Y|1|L5|G|3904
9O3Y|1|L5|A|3905
9O3Y|1|L5|A|3906
9O3Y|1|L5|G|3907
9O3Y|1|L5|A|3908
9O3Y|1|L5|C|3909
9O3Y|1|L5|C|3910
*
9O3Y|1|L5|OMG|4392
9O3Y|1|L5|G|4393
9O3Y|1|L5|A|4394
9O3Y|1|L5|U|4395
9O3Y|1|L5|A|4396
9O3Y|1|L5|A|4397
9O3Y|1|L5|C|4398
9O3Y|1|L5|U|4399||A
9O3Y|1|L5|G|4400
*
9O3Y|1|L5|C|4444
9O3Y|1|L5|U|4445
9O3Y|1|L5|U|4446
9O3Y|1|L5|5MC|4447
9O3Y|1|L5|G|4448
9O3Y|1|L5|A|4449
9O3Y|1|L5|U|4450
9O3Y|1|L5|G|4451
9O3Y|1|L5|U|4452
9O3Y|1|L5|C|4453
*
9O3Y|1|L5|G|4528
9O3Y|1|L5|G|4529
9O3Y|1|L5|UR3|4530
9O3Y|1|L5|PSU|4531
9O3Y|1|L5|PSU|4532
9O3Y|1|L5|A|4533
9O3Y|1|L5|G|4534
*
9O3Y|1|L5|PSU|4552
9O3Y|1|L5|A|4553
9O3Y|1|L5|G|4554
9O3Y|1|L5|U|4555
9O3Y|1|L5|U|4556
9O3Y|1|L5|U|4557
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LP
- Large ribosomal subunit protein uL22
- Chain La
- 60S ribosomal protein L27a
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain NC
- Nascent chain
- Chain Pt
- Transfer RNA; tRNA
Coloring options: