J5_9P6Z_009

3D structure

PDB id

9P6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

9P6Z|1|S2|G|126, 9P6Z|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P6Z|1|S2|C|125
9P6Z|1|S2|G|126
9P6Z|1|S2|C|127
9P6Z|1|S2|U|128
9P6Z|1|S2|C|129
*
9P6Z|1|S2|G|183
9P6Z|1|S2|G|184
9P6Z|1|S2|G|185
*
9P6Z|1|S2|U|214
9P6Z|1|S2|G|215
*
9P6Z|1|S2|C|310
9P6Z|1|S2|C|311
9P6Z|1|S2|G|312
*
9P6Z|1|S2|C|337
9P6Z|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8