J5_9P79_004

3D structure

PDB id

9P79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating rotate3 with Z site tRNA state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUUU

Length

42 nucleotides

Bulged bases

9P79|1|L5|A|3908, 9P79|1|L5|A|4394, 9P79|1|L5|U|4555

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P79|1|L5|A|3902
9P79|1|L5|A|3903
9P79|1|L5|G|3904
9P79|1|L5|A|3905
9P79|1|L5|A|3906
9P79|1|L5|G|3907
9P79|1|L5|A|3908
9P79|1|L5|C|3909
9P79|1|L5|C|3910
*
9P79|1|L5|OMG|4392
9P79|1|L5|G|4393
9P79|1|L5|A|4394
9P79|1|L5|U|4395
9P79|1|L5|A|4396
9P79|1|L5|A|4397
9P79|1|L5|C|4398
9P79|1|L5|U|4399
9P79|1|L5|G|4400
*
9P79|1|L5|C|4444
9P79|1|L5|U|4445
9P79|1|L5|U|4446
9P79|1|L5|5MC|4447
9P79|1|L5|G|4448
9P79|1|L5|A|4449
9P79|1|L5|U|4450
9P79|1|L5|G|4451
9P79|1|L5|U|4452
9P79|1|L5|C|4453
*
9P79|1|L5|G|4528
9P79|1|L5|G|4529
9P79|1|L5|UR3|4530
9P79|1|L5|U|4531
9P79|1|L5|PSU|4532
9P79|1|L5|A|4533
9P79|1|L5|G|4534
*
9P79|1|L5|PSU|4552
9P79|1|L5|A|4553
9P79|1|L5|G|4554
9P79|1|L5|U|4555
9P79|1|L5|U|4556
9P79|1|L5|U|4557
9P79|1|L5|U|4558

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

Large ribosomal subunit protein uL3

Chain LC

60S ribosomal protein L4

Chain La

60S ribosomal protein L27a

Chain Lb

Large ribosomal subunit protein eL29