J5_9P7A_004

3D structure

PDB id

9P7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human hibernating class2 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

AAGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUUU

Length

42 nucleotides

Bulged bases

9P7A|1|L5|A|3908, 9P7A|1|L5|A|4394, 9P7A|1|L5|C|4398, 9P7A|1|L5|U|4450, 9P7A|1|L5|G|4451, 9P7A|1|L5|U|4555, 9P7A|1|L5|U|4556

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7A|1|L5|A|3902
9P7A|1|L5|A|3903
9P7A|1|L5|G|3904
9P7A|1|L5|A|3905
9P7A|1|L5|A|3906
9P7A|1|L5|G|3907
9P7A|1|L5|A|3908
9P7A|1|L5|C|3909
9P7A|1|L5|C|3910
*
9P7A|1|L5|OMG|4392
9P7A|1|L5|G|4393
9P7A|1|L5|A|4394
9P7A|1|L5|U|4395
9P7A|1|L5|A|4396
9P7A|1|L5|A|4397
9P7A|1|L5|C|4398
9P7A|1|L5|U|4399
9P7A|1|L5|G|4400
*
9P7A|1|L5|C|4444
9P7A|1|L5|U|4445
9P7A|1|L5|U|4446
9P7A|1|L5|5MC|4447
9P7A|1|L5|G|4448
9P7A|1|L5|A|4449
9P7A|1|L5|U|4450
9P7A|1|L5|G|4451
9P7A|1|L5|U|4452
9P7A|1|L5|C|4453
*
9P7A|1|L5|G|4528
9P7A|1|L5|G|4529
9P7A|1|L5|UR3|4530
9P7A|1|L5|U|4531
9P7A|1|L5|PSU|4532
9P7A|1|L5|A|4533
9P7A|1|L5|G|4534
*
9P7A|1|L5|PSU|4552
9P7A|1|L5|A|4553
9P7A|1|L5|G|4554
9P7A|1|L5|U|4555
9P7A|1|L5|U|4556
9P7A|1|L5|U|4557
9P7A|1|L5|U|4558

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

Large ribosomal subunit protein uL3

Chain LC

60S ribosomal protein L4

Chain Lb

Large ribosomal subunit protein eL29