J5_9P7E_004

3D structure

PDB id

9P7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AAGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUUU

Length

42 nucleotides

Bulged bases

9P7E|1|L5|A|3908, 9P7E|1|L5|A|4394, 9P7E|1|L5|U|4450, 9P7E|1|L5|G|4451, 9P7E|1|L5|U|4555, 9P7E|1|L5|U|4556

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7E|1|L5|A|3902
9P7E|1|L5|A|3903
9P7E|1|L5|G|3904
9P7E|1|L5|A|3905
9P7E|1|L5|A|3906
9P7E|1|L5|G|3907
9P7E|1|L5|A|3908
9P7E|1|L5|C|3909
9P7E|1|L5|C|3910
*
9P7E|1|L5|OMG|4392
9P7E|1|L5|G|4393
9P7E|1|L5|A|4394
9P7E|1|L5|U|4395
9P7E|1|L5|A|4396
9P7E|1|L5|A|4397
9P7E|1|L5|C|4398
9P7E|1|L5|U|4399
9P7E|1|L5|G|4400
*
9P7E|1|L5|C|4444
9P7E|1|L5|U|4445
9P7E|1|L5|U|4446
9P7E|1|L5|5MC|4447
9P7E|1|L5|G|4448
9P7E|1|L5|A|4449
9P7E|1|L5|U|4450
9P7E|1|L5|G|4451
9P7E|1|L5|U|4452
9P7E|1|L5|C|4453
*
9P7E|1|L5|G|4528
9P7E|1|L5|G|4529
9P7E|1|L5|UR3|4530
9P7E|1|L5|U|4531
9P7E|1|L5|PSU|4532
9P7E|1|L5|A|4533
9P7E|1|L5|G|4534
*
9P7E|1|L5|PSU|4552
9P7E|1|L5|A|4553
9P7E|1|L5|G|4554
9P7E|1|L5|U|4555
9P7E|1|L5|U|4556
9P7E|1|L5|U|4557
9P7E|1|L5|U|4558

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LB

Large ribosomal subunit protein uL3

Chain LC

60S ribosomal protein L4

Chain Lb

Large ribosomal subunit protein eL29