J5_9P7F_010

3D structure

PDB id

9P7F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.56 Å

Loop

Sequence

CGCUC*GGGC*GUG*CCG*CG

Length

17 nucleotides

Bulged bases

9P7F|1|S2|G|126, 9P7F|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7F|1|S2|C|125
9P7F|1|S2|G|126
9P7F|1|S2|C|127
9P7F|1|S2|U|128
9P7F|1|S2|C|129
*
9P7F|1|S2|G|183
9P7F|1|S2|G|184
9P7F|1|S2|G|185
9P7F|1|S2|C|186
*
9P7F|1|S2|G|213
9P7F|1|S2|U|214
9P7F|1|S2|G|215
*
9P7F|1|S2|C|310
9P7F|1|S2|C|311
9P7F|1|S2|G|312
*
9P7F|1|S2|C|337
9P7F|1|S2|G|338

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8