J5_9P7F_012
3D structure
- PDB id
- 9P7F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.56 Å
Loop
- Sequence
- U(OMG)GA(PSU)CUUGGGAGCGGGCGUCCCCGCCC*GCG(OMU)U*A(PSU)(OMG)GAAUAGG*CAUGAUUAAGAG*CAUUA
- Length
- 60 nucleotides
- Bulged bases
- 9P7F|1|S2|C|687, 9P7F|1|S2|U|688, 9P7F|1|S2|G|696, 9P7F|1|S2|G|697, 9P7F|1|S2|G|698, 9P7F|1|S2|C|730, 9P7F|1|S2|G|731, 9P7F|1|S2|U|732, 9P7F|1|S2|C|733, 9P7F|1|S2|C|734, 9P7F|1|S2|C|735, 9P7F|1|S2|G|798, 9P7F|1|S2|U|871, 9P7F|1|S2|G|873, 9P7F|1|S2|A|913, 9P7F|1|S2|G|921
- QA status
- Modified nucleotides: OMG, PSU, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9P7F|1|S2|U|682
9P7F|1|S2|OMG|683
9P7F|1|S2|G|684
9P7F|1|S2|A|685
9P7F|1|S2|PSU|686
9P7F|1|S2|C|687
9P7F|1|S2|U|688
9P7F|1|S2|U|689
9P7F|1|S2|G|690
9P7F|1|S2|G|691
9P7F|1|S2|G|692
9P7F|1|S2|A|693
9P7F|1|S2|G|694
9P7F|1|S2|C|695
9P7F|1|S2|G|696
9P7F|1|S2|G|697
9P7F|1|S2|G|698
9P7F|1|S2|C|730
9P7F|1|S2|G|731
9P7F|1|S2|U|732
9P7F|1|S2|C|733
9P7F|1|S2|C|734
9P7F|1|S2|C|735
9P7F|1|S2|C|736
9P7F|1|S2|G|737
9P7F|1|S2|C|738
9P7F|1|S2|C|739
9P7F|1|S2|C|746
*
9P7F|1|S2|G|796
9P7F|1|S2|C|797
9P7F|1|S2|G|798
9P7F|1|S2|OMU|799
9P7F|1|S2|U|800
*
9P7F|1|S2|A|865
9P7F|1|S2|PSU|866
9P7F|1|S2|OMG|867
9P7F|1|S2|G|868
9P7F|1|S2|A|869
9P7F|1|S2|A|870
9P7F|1|S2|U|871
9P7F|1|S2|A|872
9P7F|1|S2|G|873
9P7F|1|S2|G|874
*
9P7F|1|S2|C|912
9P7F|1|S2|A|913
9P7F|1|S2|U|914
9P7F|1|S2|G|915
9P7F|1|S2|A|916
9P7F|1|S2|U|917
9P7F|1|S2|U|918
9P7F|1|S2|A|919
9P7F|1|S2|A|920
9P7F|1|S2|G|921
9P7F|1|S2|A|922
9P7F|1|S2|G|923
*
9P7F|1|S2|C|1019
9P7F|1|S2|A|1020
9P7F|1|S2|U|1021
9P7F|1|S2|U|1022
9P7F|1|S2|A|1023
Current chains
- Chain S2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- Small ribosomal subunit protein eS27
Coloring options: