J5_9P7J_003

3D structure

PDB id

9P7J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GGAAGUCGGCAAGC(OMC)GG*UG*UG*CGGACCAGG*CACUGU(OMC)

Length

37 nucleotides

Bulged bases

9P7J|1|L5|G|3620, 9P7J|1|L5|G|3625, 9P7J|1|L5|G|3839

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P7J|1|L5|G|2847
9P7J|1|L5|G|2848
9P7J|1|L5|A|2849
9P7J|1|L5|A|2850
9P7J|1|L5|G|2851
9P7J|1|L5|U|2852
9P7J|1|L5|C|2853
9P7J|1|L5|G|2854
9P7J|1|L5|G|2855
9P7J|1|L5|C|2856
9P7J|1|L5|A|2857
9P7J|1|L5|A|2858
9P7J|1|L5|G|2859
9P7J|1|L5|C|2860
9P7J|1|L5|OMC|2861
9P7J|1|L5|G|2862
9P7J|1|L5|G|2863
*
9P7J|1|L5|U|2887
9P7J|1|L5|G|2888
*
9P7J|1|L5|U|3613
9P7J|1|L5|G|3614
*
9P7J|1|L5|C|3618
9P7J|1|L5|G|3619
9P7J|1|L5|G|3620
9P7J|1|L5|A|3621
9P7J|1|L5|C|3622
9P7J|1|L5|C|3623
9P7J|1|L5|A|3624
9P7J|1|L5|G|3625
9P7J|1|L5|G|3626
*
9P7J|1|L5|C|3835
9P7J|1|L5|A|3836
9P7J|1|L5|C|3837
9P7J|1|L5|U|3838
9P7J|1|L5|G|3839
9P7J|1|L5|U|3840
9P7J|1|L5|OMC|3841

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

Ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA