J5_9P7X_004
3D structure
- PDB id
- 9P7X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AAGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUUU
- Length
- 42 nucleotides
- Bulged bases
- 9P7X|1|L5|A|3908, 9P7X|1|L5|A|4394, 9P7X|1|L5|U|4450, 9P7X|1|L5|G|4451, 9P7X|1|L5|U|4555, 9P7X|1|L5|U|4556
- QA status
- Modified nucleotides: OMG, 5MC, UR3, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9P7X|1|L5|A|3902
9P7X|1|L5|A|3903
9P7X|1|L5|G|3904
9P7X|1|L5|A|3905
9P7X|1|L5|A|3906
9P7X|1|L5|G|3907
9P7X|1|L5|A|3908
9P7X|1|L5|C|3909
9P7X|1|L5|C|3910
*
9P7X|1|L5|OMG|4392
9P7X|1|L5|G|4393
9P7X|1|L5|A|4394
9P7X|1|L5|U|4395
9P7X|1|L5|A|4396
9P7X|1|L5|A|4397
9P7X|1|L5|C|4398
9P7X|1|L5|U|4399
9P7X|1|L5|G|4400
*
9P7X|1|L5|C|4444
9P7X|1|L5|U|4445
9P7X|1|L5|U|4446
9P7X|1|L5|5MC|4447
9P7X|1|L5|G|4448
9P7X|1|L5|A|4449
9P7X|1|L5|U|4450
9P7X|1|L5|G|4451
9P7X|1|L5|U|4452
9P7X|1|L5|C|4453
*
9P7X|1|L5|G|4528
9P7X|1|L5|G|4529
9P7X|1|L5|UR3|4530
9P7X|1|L5|U|4531
9P7X|1|L5|PSU|4532
9P7X|1|L5|A|4533
9P7X|1|L5|G|4534
*
9P7X|1|L5|PSU|4552
9P7X|1|L5|A|4553
9P7X|1|L5|G|4554
9P7X|1|L5|U|4555
9P7X|1|L5|U|4556
9P7X|1|L5|U|4557
9P7X|1|L5|U|4558
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LC
- 60S ribosomal protein L4
- Chain LI
- Ribosomal protein uL16-like
- Chain LP
- 60S ribosomal protein L17
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Pt
- Transfer RNA; tRNA
Coloring options: