J5_9P9H_009

3D structure

PDB id

9P9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGCUC*GGG*UG*CCG*CG

Length

15 nucleotides

Bulged bases

9P9H|1|S2|G|126, 9P9H|1|S2|C|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9P9H|1|S2|C|125
9P9H|1|S2|G|126
9P9H|1|S2|C|127
9P9H|1|S2|U|128
9P9H|1|S2|C|129
*
9P9H|1|S2|G|183
9P9H|1|S2|G|184
9P9H|1|S2|G|185
*
9P9H|1|S2|U|214
9P9H|1|S2|G|215
*
9P9H|1|S2|C|310
9P9H|1|S2|C|311
9P9H|1|S2|G|312
*
9P9H|1|S2|C|337
9P9H|1|S2|G|338

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8