J5_9PA7_003

3D structure

PDB id

9PA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S consensus ribosome with EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GCAAGC(OMC)GG*UG*UG*CGGACCAGG*CAC

Length

25 nucleotides

Bulged bases

9PA7|1|L5|G|3620, 9PA7|1|L5|G|3625

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PA7|1|L5|G|2855
9PA7|1|L5|C|2856
9PA7|1|L5|A|2857
9PA7|1|L5|A|2858
9PA7|1|L5|G|2859
9PA7|1|L5|C|2860
9PA7|1|L5|OMC|2861
9PA7|1|L5|G|2862
9PA7|1|L5|G|2863
*
9PA7|1|L5|U|2887
9PA7|1|L5|G|2888
*
9PA7|1|L5|U|3613
9PA7|1|L5|G|3614
*
9PA7|1|L5|C|3618
9PA7|1|L5|G|3619
9PA7|1|L5|G|3620
9PA7|1|L5|A|3621
9PA7|1|L5|C|3622
9PA7|1|L5|C|3623
9PA7|1|L5|A|3624
9PA7|1|L5|G|3625
9PA7|1|L5|G|3626
*
9PA7|1|L5|C|3835
9PA7|1|L5|A|3836
9PA7|1|L5|C|3837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LR

60S ribosomal protein L19

Chain LV

60S ribosomal protein L23

Chain LW

Ribosomal protein L24

Chain S2

Small subunit ribosomal RNA; SSU rRNA