J5_9PBE_007
3D structure
- PDB id
- 9PBE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUA(OMG)
- Length
- 35 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PBE|1|S2|C|30
9PBE|1|S2|U|31
9PBE|1|S2|U|32
9PBE|1|S2|G|33
9PBE|1|S2|U|34
*
9PBE|1|S2|A|521
9PBE|1|S2|A|522
9PBE|1|S2|A|523
9PBE|1|S2|U|524
9PBE|1|S2|A|525
9PBE|1|S2|A|526
9PBE|1|S2|C|527
*
9PBE|1|S2|G|558
9PBE|1|S2|G|559
9PBE|1|S2|A|560
9PBE|1|S2|A|561
9PBE|1|S2|U|562
9PBE|1|S2|G|563
9PBE|1|S2|A|564
9PBE|1|S2|G|565
*
9PBE|1|S2|C|585
9PBE|1|S2|G|586
9PBE|1|S2|A|587
9PBE|1|S2|G|588
9PBE|1|S2|G|589
9PBE|1|S2|A|590
9PBE|1|S2|U|591
9PBE|1|S2|C|592
9PBE|1|S2|C|593
9PBE|1|S2|A|594
9PBE|1|S2|U|595
*
9PBE|1|S2|A|641
9PBE|1|S2|U|642
9PBE|1|S2|A|643
9PBE|1|S2|OMG|644
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- Small ribosomal subunit protein eS30
Coloring options: